Research
Here is a list of publications associated with ongoing work in the VBIL.
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2025
Standardizing canine breed data in veterinary records is challenging, but computer vision offers an alternative perspective on breed assignment
Glenvelis Perez, Yixuan He, Zihan Lyu, Yilin Chen, Nicholas R. Howe, Halie M. Rando
American Journal of Veterinary Research
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21 Feb 2025
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doi:10.2460/ajvr.24.10.0315
2024
Many direct-to-consumer canine genetic tests can identify the breed of purebred dogs
Halie M. Rando, Kiley Graim, Greg Hampikian, Casey S. Greene
Journal of the American Veterinary Medical Association
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01 May 2024
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doi:10.2460/javma.23.07.0372
Missing history of a modern domesticate: Historical demographics and genetic diversity in farm-bred red fox populations
Halie M Rando, Emmarie P Alexander, Sophie Preckler-Quisquater, Cate B Quinn, Jeremy T Stutchman, ..., Anastasiya V Kharlamova, Lyudmila N Trut, Jonathan N Pauli, Benjamin N Sacks, Anna V Kukekova
Journal of Heredity
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16 Apr 2024
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doi:10.1093/jhered/esae022
2023
The Coming of Age of Nucleic Acid Vaccines during COVID-19
Halie M. Rando, Ronan Lordan, Likhitha Kolla, Elizabeth Sell, Alexandra J. Lee, ..., Yusha Sun, Gregory L. Szeto, Ryan Velazquez, Jinhui Wang, Nils Wellhausen
mSystems
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27 Apr 2023
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doi:10.1128/msystems.00928-22
Application of Traditional Vaccine Development Strategies to SARS-CoV-2
Halie M. Rando, Ronan Lordan, Alexandra J. Lee, Amruta Naik, Nils Wellhausen, ..., Yusha Sun, Gregory L. Szeto, Ryan Velazquez, Jinhui Wang, Nils Wellhausen
mSystems
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27 Apr 2023
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doi:10.1128/msystems.00927-22
2022
Classifying animal breeds with the vertebrate breed ontology (VBO)
Sabrina Toro, Nicolas Matentzoglu, Kathleen R. Mullen, Nicole Vasilevsky, Halie M. Rando, ..., Christopher J. Mungall, Zhi-Liang Hu, Gregoire Leroy, Imke Tammen, Frank W. Nicholas
Proceedings of the International Conference on Biomedical Ontology
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25 Sep 2022
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url:https://icbo-conference.github.io/icbo2022/papers/ICBO-2022_paper_1882.pdf
Molecular and Serologic Diagnostic Technologies for SARS-CoV-2
Halie M. Rando, Christian Brueffer, Ronan Lordan, Anna Ada Dattoli, David Manheim, ..., David Mai, Nils Wellhausen, COVID-19 Review Consortium, Anthony Gitter, Casey S. Greene
arXiv
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01 Jan 2022
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doi:10.48550/ARXIV.2204.12598
2021
Identification and Development of Therapeutics for COVID-19
Halie M. Rando, Nils Wellhausen, Soumita Ghosh, Alexandra J. Lee, Anna Ada Dattoli, ..., Rishi Raj Goel, YoSon Park, Simina M. Boca, Anthony Gitter, Casey S. Greene
mSystems
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21 Dec 2021
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doi:10.1128/mSystems.00233-21
Characterizing Long COVID: Deep Phenotype of a Complex Condition
Rachel R Deer, Madeline A Rock, Nicole Vasilevsky, Leigh Carmody, Halie Rando, ..., Umit Topaloglu, George D. Vavougios, Liwei Wang, Melissa A Haendel, Peter N Robinson
eBioMedicine
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01 Dec 2021
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doi:10.1016/j.ebiom.2021.103722
Pathogenesis, Symptomatology, and Transmission of SARS-CoV-2 through Analysis of Viral Genomics and Structure
Halie M. Rando, Adam L. MacLean, Alexandra J. Lee, Ronan Lordan, Sandipan Ray, ..., Rishi Raj Goel, Serghei Mangul, Tiago Lubiana, Anthony Gitter, Casey S. Greene
mSystems
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26 Oct 2021
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doi:10.1128/msystems.00095-21
An Open-Publishing Response to the COVID-19 Infodemic
Halie M. Rando, Simina M. Boca, Lucy D'Agostino McGowan, Daniel S. Himmelstein, Michael P. Robson, Vincent Rubinetti, Ryan Velazquez, Casey S. Greene, Anthony Gitter
Digital Infrastructures for Scholarly Content Objects 2021
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30 Sep 2021
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url:http://ceur-ws.org/Vol-2976/paper-2.pdf
Dietary Supplements and Nutraceuticals under Investigation for COVID-19 Prevention and Treatment
Ronan Lordan, Halie M. Rando, Casey S. Greene
mSystems
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29 Jun 2021
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doi:10.1128/mSystems.00122-21
Challenges in defining Long COVID: Striking differences across literature, Electronic Health Records, and patient-reported information
Halie M. Rando, Tellen D. Bennett, James Brian Byrd, Carolyn Bramante, Tiffany J. Callahan, ..., Joel H. Saltz, Anthony Solomonides, Anupam Sule, Umit Topaloglu, Melissa A. Haendel
Cold Spring Harbor Laboratory
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26 Mar 2021
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doi:10.1101/2021.03.20.21253896
Sequencing Red Fox Y Chromosome Fragments to Develop Phylogenetically Informative SNP Markers and Glimpse Male-Specific Trans-Pacific Phylogeography
Benjamin N. Sacks, Zachary T. Lounsberry, Halie M. Rando, Kristopher Kluepfel, Steven R. Fain, Sarah K. Brown, Anna V. Kukekova
Genes
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14 Jan 2021
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doi:10.3390/genes12010097
2019
The Red Fox Y-Chromosome in Comparative Context
Halie M. Rando, William H. Wadlington, Jennifer L. Johnson, Jeremy T. Stutchman, Lyudmila N. Trut, Marta Farré, Anna V. Kukekova
Genes
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28 May 2019
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doi:10.3390/genes10060409
2018
Four structural variants associated with human‐directed sociability in dogs are not found in tame red foxes (Vulpes vulpes)
Estelle R. Bastounes, Halie M. Rando, Jennifer L. Johnson, Lyudmila N. Trut, Benjamin N. Sacks, Carlos A. Driscoll, Bridgett vonHoldt, Anna V. Kukekova
Animal Genetics
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10 Dec 2018
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doi:10.1111/age.12755
Red fox genome assembly identifies genomic regions associated with tame and aggressive behaviours
Anna V. Kukekova, Jennifer L. Johnson, Xueyan Xiang, Shaohong Feng, Shiping Liu, ..., Xu Wang, Andrew G. Clark, Gregory M. Acland, Lyudmila N. Trut, Guojie Zhang
Nature Ecology & Evolution
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06 Aug 2018
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doi:10.1038/s41559-018-0611-6
Construction of Red Fox Chromosomal Fragments from the Short-Read Genome Assembly
Halie M. Rando, Marta Farré, Michael P. Robson, Naomi B. Won, Jennifer L. Johnson, ..., Jaebum Kim, Guojie Zhang, Lyudmila N. Trut, Denis M. Larkin, Anna V. Kukekova
Genes
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20 Jun 2018
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doi:10.3390/genes9060308
2017
Development of a genotype‐by‐sequencing immunogenetic assay as exemplified by screening for variation in red fox with and without endemic rabies exposure
Michael E. Donaldson, Yessica Rico, Karsten Hueffer, Halie M. Rando, Anna V. Kukekova, Christopher J. Kyle
Ecology and Evolution
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02 Dec 2017
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doi:10.1002/ece3.3583
Y-Chromosome Markers for the Red Fox
Halie M Rando, Jeremy T Stutchman, Estelle R Bastounes, Jennifer L Johnson, Carlos A Driscoll, Christina S Barr, Lyudmila N Trut, Benjamin N Sacks, Anna V Kukekova
Journal of Heredity
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14 Aug 2017
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doi:10.1093/jhered/esx066